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1

Fast algorithms for placing large entries along the diagonal of a sparse matrix

Vamsi Kundeti, Sanguthevar Rajasekaran

Journal:

Journal of Computational and Applied Mathematics

Year:

2010

Language:

english

File:

PDF, 285 KB

english, 2010

2

Self assembly of rectangular shapes on concentration programming and probabilistic tile assembly models

Vamsi Kundeti, Sanguthevar Rajasekaran

Journal:

Natural Computing

Year:

2012

Language:

english

File:

PDF, 515 KB

english, 2012

3

PMS5: an efficient exact algorithm for the (ℓ,d)-motif finding problem

Hieu Dinh, Sanguthevar Rajasekaran, Vamsi K Kundeti

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 252 KB

english, 2011

4

A computational tool for identifying minimotifs in protein–protein interactions and improving the accuracy of minimotif predictions

Sanguthevar Rajasekaran, Jerlin Camilus Merlin, Vamsi Kundeti, Tian Mi, Aaron Oommen, Jay Vyas, Izua Alaniz, Keith Chung, Farah Chowdhury, Sandeep Deverasatty, Tenisha M. Irvey, David Lacambacal, Darl

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2011

Language:

english

File:

PDF, 965 KB

english, 2011

5

Optimal Algorithms for Some Polygon Enclosure Problems for VLSI Layout Analysis

Vamsi Krishna Kundeti, Prosenjit Gupta

Journal:

Journal of Mathematical Modelling and Algorithms in Operations Research

Year:

2006

Language:

english

File:

PDF, 247 KB

english, 2006

6

Efficient algorithms for self assembling non-rectangular nano structures

Vamsi Kundeti, Sanguthevar Rajasekaran

Journal:

Natural Computing

Year:

2011

Language:

english

File:

PDF, 730 KB

english, 2011

7

Efficient out-of-core sorting algorithms for the Parallel Disks Model

Vamsi Kundeti, Sanguthevar Rajasekaran

Journal:

Journal of Parallel and Distributed Computing

Year:

2011

Language:

english

File:

PDF, 350 KB

english, 2011

8

MimoSA: a system for minimotif annotation

Jay Vyas, Ronald J Nowling, Thomas Meusburger, David Sargeant, Krishna Kadaveru, Michael R Gryk, Vamsi Kundeti, Sanguthevar Rajasekaran, Martin R Schiller

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 918 KB

english, 2010

9

Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs

Vamsi K Kundeti, Sanguthevar Rajasekaran, Hieu Dinh, Matthew Vaughn, Vishal Thapar

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 926 KB

english, 2010

10

[IEEE 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Orlando, FL, USA (2011.02.3-2011.02.5)] 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Workshop: Efficient sequential and parallel algorithms for sequence assembly

Rajasekaran, Sanguthevar, Dinh, Hieu, Kundeti, Vamsi

Year:

2011

Language:

english

File:

PDF, 58 KB

english, 2011

11

[IEEE 2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering (BIBE) - Taichung, Taiwan (2009.06.22-2009.06.24)] 2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering - On the Hardness of the Border Length Minimization Problem

Kundeti, Vamsi, Rajasekaran, Sanguthevar

Year:

2009

Language:

english

File:

PDF, 222 KB

english, 2009

12

Border Length Minimization Problem on a Square Array

Kundeti, Vamsi, Rajasekaran, Sanguthevar, Dinh, Hieu

Journal:

Journal of Computational Biology

Year:

2014

Language:

english

File:

PDF, 467 KB

english, 2014

13

[IEEE 2008 International Conference on Application-Specific Systems, Architectures and Processors (ASAP) - Leuven, Belgium (2008.07.2-2008.07.4)] 2008 International Conference on Application-Specific Systems, Architectures and Processors - An efficient digital circuit for implementing Sequence Alignment algorithm in an extended processor

Kundeti, Vamsi, Yunsi Fei,, Rajasekaran, Sanguthevar

Year:

2008

Language:

english

File:

PDF, 367 KB

english, 2008

14

Efficient Algorithms for Computing With Protein-Based Volumetric Memory Processors

Rajasekaran, Sanguthevar, Kundeti, Vamsi, Birge, Robert, Kumar, Vipin, Sahni, Sartaj

Journal:

IEEE Transactions on Nanotechnology

Year:

2011

Language:

english

File:

PDF, 743 KB

english, 2011

15

[IEEE 2008 8th IEEE International Conference on Bioinformatics and BioEngineering (BIBE) - Athens, Greece (2008.10.8-2008.10.10)] 2008 8th IEEE International Conference on BioInformatics and BioEngineering - A local structural alignment algorithm with Variable Length Alignment Fragment Pairs

Kundeti, Vamsi, Rajasekaran, Sanguthevar

Year:

2008

Language:

english

File:

PDF, 4.60 MB

english, 2008

16

[IEEE 2009 IEEE Congress on Evolutionary Computation (CEC) - Trondheim, Norway (2009.05.18-2009.05.21)] 2009 IEEE Congress on Evolutionary Computation - Generalized algorithms for generating balanced modulation codes in protein-based volumetric memories

Kundeti, Vamsi, Rajasekaran, Sanguthevar, Birge, Robert

Year:

2009

Language:

english

File:

PDF, 1.13 MB

english, 2009

17

ON THE HARDNESS OF THE BORDER LENGTH MINIMIZATION PROBLEM ON A RECTANGULAR ARRAY

KUNDETI, VAMSI, RAJASEKARAN, SANGUTHEVAR

Journal:

International Journal of Foundations of Computer Science

Year:

2010

Language:

english

File:

PDF, 268 KB

english, 2010

18

SPECTRUM BASED TECHNIQUES FOR GRAPH ISOMORPHISM

RAJASEKARAN, SANGUTHEVAR, KUNDETI, VAMSI

Journal:

International Journal of Foundations of Computer Science

Year:

2009

Language:

english

File:

PDF, 302 KB

english, 2009

19

AN EFFICIENT ALGORITHM FOR CHINESE POSTMAN WALK ON BI-DIRECTED DE BRUIJN GRAPHS

KUNDETI, VAMSI, RAJASEKARAN, SANGUTHEVAR, DINH, HEIU

Journal:

Discrete Mathematics Algorithms and Applications

Year:

2012

Language:

english

File:

PDF, 250 KB

english, 2012

20

[ACM Press the First ACM International Conference - Niagara Falls, New York (2010.08.02-2010.08.04)] Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB '10 - On the border length minimization problem (BLMP) on a square array

Kundeti, Vamsi, Rajasekaran, Sanguthevar, Dinh, Hieu

Year:

2010

Language:

english

File:

PDF, 168 KB

english, 2010

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